OK,
JohnnyCanuck Here's a list to go with the general histories already mentioned.
Keep in mind the fact that there's no such thing as history without an axe to grind, and if there was it would make a dull read. So some of these are problematic (eg Prebble). But you should read them anyway.
Wars of Independence
Scotland, the Making of the Kingdom volume 1, A.A.M. Duncan
Robert Bruce and the community of the Realm of Scotland, GWS Barrow
Jacobite Rising
Culloden, John Prebble
Clearances, the Crofters War, Land-raids etc.
Mightier Than A Lord, Iain Fraser Grigor
The Poor Had No Lawyers, Andy Wightman
The Making of the Crofting Community, James Hunter
Clanship to Crofter's War: The Social Transformation of the Scottish Highlands, Tom Devine
The Scottish insurrection of 1820, Seamus Mac a'Ghobhainn, and Peter Berresford Ellis
The Highland Clearances, John Prebble
Industrial Revolution and the Working Class
The Rousing of the Scottish working class, JD Young
Scottish Radicalism
The Very Bastards of Creation, JD Young